SE3520236

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6454
  • Mimulus guttatus
  • SE3520236
  • Mutator
  • M8
  • scaffold_11:5569304-5569768
  • TAAACTATA
  • TAGGGTAAATTACAACCACCCCTGAGGTATGGTCAAATTACGAAAAAATCCCTTTTGTTTGGATAATTACATCTACCCCTCAACTATGAATCTTCTTACACCTCCATCCTTATGGTGTCAAATT

Secondary structure and sequence

TSD    TIR
5'



3'
TAAACTA                   C C           C            AA   -           A        TCT               ATC         C         A    G       CAATAT    ATATA    CC         GC  TAG            ---------    -  AAAAATACAGTTTATGATGCACCACAATTTGATATATATAC
       TAGGGTAAATTACAACCAC C TGAGGTATGGT AAATTACGAAAA  TCC CTTTTGTTTGG TAATTACA   ACCCCTCAACTATGA   TTCTTACAC TCCATCCTT TGGT TCAAATT      AATC     GATT  GTGGAATGT  TC   TTTGTACTCGTT         CTGT GT                                         
       ||||||||||||||||||| | ||||||||||| ||||||||||||  ||| ||||||||||| ||||||||   |||||||||||||||   ||||||||| ||||||||| |||| |||||||      ||||     ||||  |||||||||  ||   ||||||||||||         |||| ||                                         A
       ATCCCATTTAATGTTGGTG G ACTCCATACTA TTTAATGCTTTT  GGG GAGAACAAACC ATTAATGT   TGGGGAGTTGATATT   AAGAATGTG AGGTAGGAA GCCA AGTTTAA      TTAG     CTAA  TACCTTATA  AG   AAACATGGGCAG         CTCG GG                                         
ATATCAA                   A A           T            -G   C           C        TAT               AAA         C         C    A       ATCACC    AAGAA    TA         AT  TGA            AATAGTAAG    A  TGTAAAACTTCGTTCTACTAGTATTCTACATAAAATACCGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End