SE3520237

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6455
  • Mimulus guttatus
  • SE3520237
  • Mutator
  • M4
  • scaffold_4:6505659-6506134
  • TATATAAAA
  • TATATAAAAGGGTAAATTCCACATTCTCCCTTGTACTTTGGCTCGGTATCACTTTCTCCTCCTACTCTCGATTGTATCGACTTCCCCCCTGCACTTGA

Secondary structure and sequence

TSD    TIR
5'



3'
        AAA           C  AT           -C    GC     A     -TT  -   C       C           C  CCC            ATTTTTTTC          CCATCGCCA   T  T                  C        ATC       GA    A       AAAA    -    ----     C         -      ------------------------AA    TTT
   TATAT   AGGGTAAATTC AC  TCTCCCTTGTA  TTTG  TCGGT TCACT   CT CCT CTACTCT GATTGTATCGA TT   CCCTGCACTTGA         CTCAATGTAG         TTA TT TCAGACATTTGACCTTAA ACCGTTTG   TAAGTTT  AAAT ACAAAAA    ACCC TCCC    AGTTT AATAATTAT AAAAAA                          AATG   
   |||||   ||||||||||| ||  |||||||||||  ||||  ||||| |||||   || ||| ||||||| ||||||||||| ||   ||||||||||||         ||||||||||         ||| || |||||||||||||||||| ||||||||   |||||||  |||| |||||||    |||| ||||    ||||| ||||||||| ||||||                          ||||    
   ATATA   TCCCATTTAAG TG  AGGGGGAACAT  AAAC  AGCCA AGTGA   GA GGA GATGAGA CTAACGTAGCT AA   GGGACGTGAACT         GAGTTACATC         AAT AA AGTCTGTAAACTGGAATT TGGCAAAC   ATTCAAG  TTTA TGTTTTT    TGGG GGGG    TCAAA TTATTAATA TTTTTT                          TTGC   
AAA     ---           A  AC           AA    -A     -     CAT  A   A       A           A  --C            -CTTTAACA          AGAAACAAC   C  C                  A        CAT       AC    A       ----    T    CGAA     T         A      ATCTATTTGTTATTTTTCTTGTTCTG    TCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End