SE3520239

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6457
  • Mimulus guttatus
  • SE3520239
  • Mutator
  • M2
  • scaffold_2:14491456-14491912
  • TAATAAATA
  • TAGGGTAAATTACAACCACCCCTGAGGTATGGTCAATTTACGAAAAAAACCCTCTTGTTTGGATAATTACATCTACCCCCTCAACTATGATTTTTTCTTACACCTCCACCCTTATGGTGTCAAATT

Secondary structure and sequence

TSD    TIR
5'



3'
TAATAAA                                    T   C      AA             A        T       C          TT          CC   A     A    G       --   C  A  --   TGGA ------    C   A -----   GTACTCGTTTTGTGTAAAAATACAGTTTCTGATGCACCACAATCTGATATATACAAGCCAAAG
       TAGGGTAAATTACAACCACCCCTGAGGTATGGTCAA TTA GAAAAA  CCCTCTTGTTTGG TAATTACA CTACCCC TCAACTATGA  TTTTCTTACA  TCC CCCTT TGGT TCAAATT  CAA AT AT  CAT    A      TGTG TCT G     TTT                                                               
       |||||||||||||||||||||||||||||||||||| ||| ||||||  ||||||||||||| |||||||| ||||||| ||||||||||  ||||||||||  ||| ||||| |||| |||||||  ||| || ||  |||    |      |||| ||| |     |||                                                                
       ATCCCATTTAATGTTGGTGGGGACTCCATACCAGTT AAT CTTTTT  GGGAGGACAAACC ATTAATGT GGTGGGG AGTTGATATT  AGAAGAATGT  AGG GGGAA GCCA AGTTTAA  CAC CT TA  AGC    T      TACC TTA T     TGA                                                               
ATAAATA                                    T   A      GG             C        T       -          -T          AC   G     C    A       AT   -  -  GA   ---- ATAATA    -   - AATAG   AAACATGGTCAAAATAGGGTAAGCTTGAGGTGTAAAACTTCGTTCTACTAGTATTATACACAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End