SE3550240

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6458
  • Mimulus guttatus
  • SE3550240
  • PIF/harbinger
  • To5
  • scaffold_12:620609-620978
  • AAG
  • GGCAATGTTTGGAAGCGTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAG              G      GG     ATT     - TCATTTTGAGGAAATATGTTTTGGGGGAATAATTTGAGAATGAAAGTAATGTTTGTTTGTATTTTGGAAGGAGACAAAATACACTGTAGCAATCAAATCATGTTTAAAGGTGTTAGAAAAAGGTATTTTTGAAGAAAAAAATTGAA
   GGCAATGTTTGGAA CGTTTT  ATCTT   TTGAT T                                                                                                                                                  
   |||||||||||||| ||||||  |||||   ||||| |                                                                                                                                                  A
   CCGTTACAAACCTT GCAAAA  TAAAA   CAAAA T                                                                                                                                                  
GAA              G      -A     ---     G AACAAAGGGGTTTTGTTTTACCCTAAATAATGTGAAAAGTTTAGTAAAGAGTTTTGTTAAAGTTTTCAAAGAGAGAGGAAGTCTGTACTACACTGACGATGTCATTTTTTACAGAAGTGATTTTTTGTTTATTTGTAGTGAAGTGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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