SE3520241

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6459
  • Mimulus guttatus
  • SE3520241
  • Mutator
  • M5
  • scaffold_9:12382669-12383034
  • TTTGATTTA
  • GATTTAGGGTAAATTACGAAAACCCCCTGAACTTAGGATAAATAACGAAAAATACCTCAACTTATTCGTAATTACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTT    -T           C     -C              A                C           C     T   AAAA     CTTGAAGTTTGTTTCCATCTTACACCAACCCCTTACTGTGTGACTTTTCACGGATTTTTTTTTTTTTATTCCGGGGAATAGAATTTACACAATT
   GATT  AGGGTAAATTA GAAAA  CCCCTGAACTTAGG TAAATAACGAAAAATA CTCAACTTATT GTAAT ACC    AAACT                                                                                              
   ||||  ||||||||||| |||||  |||||||||||||| |||||||||||||||| ||||||||||| ||||| |||    |||||                                                                                              T
   TTAG  TCCCATTTAAT CTTTT  GGGGACTTGAATCC ATTTATTGCTTTTTGT GGGTTGAATAG CATTA TGG    AGGAG                                                                                              
 AT    TT           A     TC              G                A           A     T   CTTT     TAGATCAATTGAAAACTAGCTCAAAAAATTGTCTTTTACACATGTCAGATAATATAGAAAACAATTTATCCACTCTTTATTTTCTTGTATAGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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