SE3520242

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6460
  • Mimulus guttatus
  • SE3520242
  • Mutator
  • M15
  • scaffold_7:5474226-5474596
  • TTAAATCAA
  • AAGGGTAAATAGCATTTAACCCCCCTGCGGTTACAAACTTTTGCAGATGACTCCCTTGTGCTTGTAATATCGGCACATAACCTCCTTGTGGTTTATGGGGTAGCTTCCGTTAGTTTTTTCCGTCAAACTTAACCGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAATC                    C      C        A               C                   G                    T             C          T                 GTGTT      TTC    -GGGTCATC    AAA    AA  ACA
       AAGGGTAAATAGCATTTAAC CCCCTG GGTTACAA CTTTTGCAGATGACT CCTTGTGCTTGTAATATCG CACATAACCTCCTTGTGGTT ATGGGGTAGCTTC GTTAGTTTTT CCGTCAAACTTAACCGC     TCAAAC   AAGG         TGCA   ATGA  GC   
       |||||||||||||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||     ||||||   ||||         ||||   ||||  ||    
       TTCCCATTTATCGTGAATTG GGGGAT CCAATGTT GAAAACGTCTACTGA GGAACACGAACATTATAGT GTGTATTGGGGGAATACCAA TACCCCATCGAAG CAATCAAAAA GGTAGTTTGAATTGGCG     AGTTTG   TTTC         ACGT   TACT  CG   
AACTAAA                    A      A        C               T                   A                    C             A          -                 AAGAC      CAC    ATAAAAAAA    --C    -G  GGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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