Plant MITE

SE3520243

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6461
Mimulus guttatus
SE3520243
Mutator
M16
scaffold_10:17092311-17092522
TCTCTAGCA
CTAGCACGATTTGTTCGACCCTACACCCGGTGAAAAACACCGGGTGAGTCTTTTGCTGCCACGTGTCTCTTTTTTAAATTTTT

Secondary structure and sequence

TSD TIR

5'

3'

TCT    CAC A   G       C                         A                   C        AA      ATAAT       GCGCT   GT
   CTAG   G TTT TTCGACC TACACCCGGTGAAAAACACCGGGTG GTCTTTTGCTGCCACGTGT TCTTTTTT  ATTTTT     AGATTCC     AGG  
   ||||   | ||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||  ||||||     |||||||     |||  T
   GATC   C AAG AAGCTGG ATGTGGGCCACTTTTTGTGGCCCAC CAGAAGACGACGGTGCACA AGAAAAAA  TAAAAA     TTTGGGG     TCC  
CAC    TCT C   G       C                         C                   -        AA      --GAT       --ATT   AT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520243

TCTCTAGCACGATTTGTTCGACCCTACACCCGGTGAAAAACACCGGGTGAGTCTTTTGCTGCCACGTGTCTCTTTTTTAAATTTTTATAATAGATTCCGCGCTAGGGTTTACCTTTAGGGGTTTTAGAAAAATAAAAAAAAGAACACGTGGCAGCAGAAGACCCACCCGGTGTTTTTCACCGGGTGTACGGTCGAAGGAACCTCTCTAGCAC

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