SE3520244

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6462
  • Mimulus guttatus
  • SE3520244
  • Mutator
  • M4
  • scaffold_8:22783522-22784070
  • ATAATTTTA
  • GGGTAAATTCCACCTTCCCCTCTTGTACTTTGGCTTGGTAACTTTACCTCCTTACTACTCTAGATTGCATGGATTTGCCCCCTGCACTTGAAAAATTGTCTCAATGTGGCCCTCGTTGTTAGTTGTCAGACATTTGACCTCAACACCGTTTGTTCTAAGATTTGAATTTACAAAAACACCACCTCTCTCAGTTTAAATAATTATTCAAAAAAACAAAAAATAAGTATAAA

Secondary structure and sequence

TSD    TIR
5'



3'
ATAATTTTA             C      TC                  --        T    A       A        GG        -    C                                   A   G    ACA  T     C           T      A      -T         CAC                          C     AAC          -T     AAAAACAAAAAATAAAATAATAAAAAAT  AAGACAACGAGAA
         GGGTAAATTCCAC TTCCCC  TTGTACTTTGGCTTGGTA  ACTTTACC CCTT CTACTCT GATTGCAT  ATTTGCCC CCTG ACTTGAAAAATTGTCTCAATGTGGCCCTCGTTGTT GTT TCAG   TT GACCT AACACCGTTTG TCTAAG TTTGAA  TTACAAAAA   CACCTCTCTCAGTTTAAATAATTATT AAAAA   AAAAAATAAG  ATAAA                            TC             
         ||||||||||||| ||||||  ||||||||||||||||||  |||||||| |||| ||||||| ||||||||  |||||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||   || ||||| ||||||||||| |||||| ||||||  |||||||||   |||||||||||||||||||||||||| |||||   ||||||||||  |||||                            ||              
         CCCATTTAAGGTG AAGGGG  AACATGAAACCGAACTAT  TGAAATGG GGAA GATGAGA CTAACGTA  TAAACGGG GGAC TGAACTTTTTAACAGAGTTGCACCGGGAGCGACAA CAA AGTC   AA CTGGA TTGTGGCAAGC AGATTC AGACTT  AATGTTTTT   GTGGGGAGGGTCAAATTTATTAATAA TTTTT   TTTTTTATTT  TATTT                            CA             
ATTTTTATA             A      CA                  AG        -    -       G        GA        A    A                                   C   A    GGG  C     A           T      -      TT         TCA                          T     AAT          TT     -----------------AACACCGACCG  GAACCTGATACAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End