SE3520246

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6464
  • Mimulus guttatus
  • SE3520246
  • Mutator
  • M19
  • scaffold_9:13301939-13302599
  • TTAAGTGAA
  • TTAAGTGAAGGCTTAATTCCACTTTCCACCATTGAAATGGAGCACTTTGGTACTTTGAACCCTTGAAA

Secondary structure and sequence

TSD    TIR
5'



3'
     GTG                  C    -A     -   G  C   TT         A     T    AATAA       A        CC  A          A        C      -   TGA  C      GAATAAT     -- TAATTCATTTTTATTGATCTTTTTTTCGCGATGCAAAATAATAAATTAAATTGTTATTTTATTCAACCTCCAACCTAATTTTGAGCGCACAAAGGGCGAACATAAAACACACAACCGATGATTGAAAAAAAAAATTATATATTTCTTGCAAAATAAAATCAAATAAACTTTTATCATTAAATTAT
 TTAA   AAGGCTTAATTCCACTTT CACC  TTGAA ATG AG ACT  GGTACTTTG ACCCT GAAA     TAATAGC CTTTGCAC  TC AAACACAATA ATCGTTCA AATGCA CTT   GC TGAATT       AAATG  A                                                                                                                                                                                         
 ||||   |||||||||||||||||| ||||  ||||| ||| || |||  ||||||||| ||||| ||||     ||||||| ||||||||  || |||||||||| |||||||| |||||| |||   || ||||||       |||||  |                                                                                                                                                                                         T
 AGTT   TTCCGAATTAGGGTGAAA GTGG  AGCTT TAT TT TGA  TCGTGAAAC TGGGA CTTT     ATTATTG GAAACGTG  AG TTTGTGTTAT TAGTAGGT TTACGT GGG   TG ACTTAA       AATTT  A                                                                                                                                                                                         
A    -AA                  C    GA     A   G  A   --         G     T    ATTTA       A        TA  C          A        A      A   ---  T      ------A     CG TTATTTTCATTAAATTATAAAATTCACCATAACTTAAAAAAATAAAAATAAAATAGAGTTTTCCAATAAAATGCTTTTGTTTTGGTAAGTTGATAAAGCAATATTTCAATAGACTTTTAGTATAAAAGAAGGTTTATAAAGATGTATTATTGAAGGTGGTTAATGTTATTTTCTGTATAGTTAGC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End