SE3520247

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6465
  • Mimulus guttatus
  • SE3520247
  • Mutator
  • M5
  • scaffold_10:15030010-15030370
  • TAATAAATT
  • GGGTAAATTACGAAACCCCCATGAACTTAGGCTAAATAACGAAAAAAACCCCCACCTATTCGTAATTACCAAAAATCCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATAAATT               --C    A                  C      A        C          T  C    A  C   ------    T  GTTTCCATCTTACACCAACTCCTTATAGCGTGACTTTTCACGGATTTCTTTTTATTCCAGGGAATAACCTTTACACAATT
         GGGTAAATTACGAAA   CCCC TGAACTTAGGCTAAATAA GAAAAA ACCCCCAC TATTCGTAAT AC AAAA TC CCT      GAAG TT                                                                                
         |||||||||||||||   |||| |||||||||||||||||| |||||| |||||||| |||||||||| || |||| || |||      |||| ||                                                                                T
         CCCATTTAATGCTTT   GGGG ACTTGAATCCGATTTATT TTTTTT TGGGGGTG ATAAGCATTA TG TTTT AG GGA      TTGA CA                                                                                
ATAAATAAT               TTA    -                  A      A        C          T  A    A  A   GATTAA    -  ACTAGCTCAAAAAATTATCTTTTACACATGTCAAATAATATGGAAGACAATTTATCCACTCTTTATTTTCTTTTATAGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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