SE3520249

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6467
  • Mimulus guttatus
  • SE3520249
  • Mutator
  • M2
  • scaffold_10:5265077-5265350
  • AAGAAATTA
  • GGGCAAATTACGGCCACCCCCTGAGGTATGCTCAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAGAAATTA         A   ------        -       T        AACAAAAAAAAAA                 T           C     C              ------  G  CA      --T    TCA
         GGGCAAATT CGG      CCACCCCC TGAGGTA GCTCAAAT             CCTCATGTTTGGGTAAT ACAACCACCCC TCAAC ATGTATTGTCTTAC      AC TC  CCTTTA   GGTG   
         ||||||||| |||      |||||||| ||||||| ||||||||             ||||||||||||||||| ||||||||||| ||||| ||||||||||||||      || ||  ||||||   ||||   A
         CCCGTTTAA GCC      GGTGGGGG ACTCCAT CGGGTTTA             GGAGTACAAACCTATTA TGTTGGTGGGG AGTTG TACATAACAGAATG      TG AG  GGAAGT   CCAT   
ATTAAAAAA         A   AGTGGG        G       T        -ATACTCTTTCGG                 C           A     A              CTTTTT  G  -A      CAT    TCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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