SE3520250

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6468
  • Mimulus guttatus
  • SE3520250
  • Mutator
  • M19
  • scaffold_13:18071581-18072331
  • TAAATTGAA
  • GGCTTAATTCCACTTTGCACCCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAATTGAAT                                                           TAAAT                                     G            -   A     TTT     -       A   AAATCTAATATTTTTAGTGATATTTTTTTAGAACGCCAAATGTCAAATATTTTTTTTATTCATCAATCATTTTGAAACTATAAAGTTTAAGAATAAAAATACATTTCATCAACATATTTAAAAATTATATTTTTTATCAAAATAAAATATTTTACGAAAAAAAATCATTCAGCTATTCCGTTATCAAGTTATCTGAAAATCATATTTCCTTCTAAATATTTTC
          GGCTTAATTCCACTTTGCACCCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAAA     TAATAGCACTTTGCACCCTCGAAATACAATAAATCAT CATAATGCACCC CAA TGAAT   TAAAG CTAAAAA TAT                                                                                                                                                                                                                               
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||   ||||| ||||||| |||                                                                                                                                                                                                                                
          CCGAATTAAGGTGAAACGTGGGAACTTTATATGGTAAAACCGTGAAACGTGGGAGCTTT     ATTATCGTGAAACGTGGGAGTTTTGTGTTATTTAGTA GTGTTACGTGGG GTT ACTTA   ATTTC GTTAAAG AAA                                                                                                                                                                                                                               
TAAGTTAAAT                                                           TTATT                                     A            A   A     -TT     C       T   AAGTAACCACAAAAATAAAAGGCTCATGTTTTATTTTTTTTTTTAACAATAAAAGAACTTGAAGTTTGGATTAAAGCTCGCCTGTTTCACGCTTTTTTATTTTTAATGTGGCCTCATAATTTTTTTTGATGTAAAAGAATGTTTTCTTTTTATTTTTTATTCGAAAATAGTGATTTAATAAGCTAATTACCTAGAAAATACATTGACAAATTTTTATAATCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3