SE3520251

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6469
  • Mimulus guttatus
  • SE3520251
  • Mutator
  • M2
  • scaffold_1:4034497-4034761
  • TTATAATAA
  • TATAATAAGGGCAAATTACGACCAACCCCCTAAGGTAAGGTCAAATTACGAAAAAACCTCTCATGTTTGGGTAATTACAACCACTCCCTCATCTATGTATTGCCTTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
T   A       C        AC  AC     A      G                       A                  C  T      T        TGC     -ACGT  A     A A   TCAAATT
 TAT ATAAGGG AAATTACG  CA  CCCCT AGGTAA GTCAAATTACGAAAAAACCTCTC TGTTTGGGTAATTACAAC AC CCCTCA CTATGTAT   CTTAC     CC CCCTT C TTG       
 ||| ||||||| ||||||||  ||  ||||| |||||| ||||||||||||||||||||||| |||||||||||||||||| || |||||| ||||||||   |||||     || ||||| | |||        
 ATA TATTCCC TTTAATGC  GT  GGGGA TCCGTT CAGTTTAATGCTTTTTTGGGGAG ACAAACCCATTAATGTTG TG GGGAGT GATACATA   GAATG     GG GGGAA G AGC       
A   A       A        CC  --     C      A                       A                  A  -      T        CAA     CTTTT  G     - A   CATCCAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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