Plant MITE

SE3520252

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6470
Mimulus guttatus
SE3520252
Mutator
M5
scaffold_14:7197179-7197537
TTAATTAAA
TTAATTAAAGGGTAAATTACGAAAACCCCCTAAACTTAGATTAAATTACAAAAACCACCTCTACCTATTTGTAATTATCAAAAACCCCT

Secondary structure and sequence

TSD TIR

5'

3'

         A                -              A      TAC    AC A        T         T       -A     GA   -   TTTCCGTCTTACATCAAACCAGTTACAGTGTGACTTTTCACGGATTTTTTTTATTCGGAGGAATAAAATTTACACAATTTCA
 TTAATTAA GGGTAAATTACGAAAA CCCCCTAAACTTAG TTAAAT   AAAA  C CCTCTACC ATTTGTAAT ATCAAAA  CCCCT  GGT TTG                                                                                  
 |||||||| |||||||||||||||| |||||||||||||| ||||||   ||||  | |||||||| ||||||||| |||||||  |||||  ||| |||                                                                                   
 AATTAATT CCCATTTAATGCTTTT GGGGGATTTGAATC GATTTA   TTTT  G GGGGGTGG TAGGCATTG TGGTTTT  GGGGA  GAT AAT                                                                                  
A        -                A              C      TTA    AT A        C         T       AA     --   T   TGACAACTAGCTCAAAAATTGTCTTTTACACATGTCAGATAATATGGACTACAATTTATCCACTCTTTATTTTCTTTTATAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520252

TTAATTAAAGGGTAAATTACGAAAACCCCCTAAACTTAGATTAAATTACAAAAACCACCTCTACCTATTTGTAATTATCAAAAACCCCTGAGGTTTGTTTCCGTCTTACATCAAACCAGTTACAGTGTGACTTTTCACGGATTTTTTTTATTCGGAGGAATAAAATTTACACAATTTCAGATATTTTCTTTTATTTCTCACCTATTTAACATCAGGTATAATAGACTGTACACATTTTCTGTTAAAAACTCGATCAACAGTTAATTAGAGGGGAATTTTGGTTGTTACGGATCGGTGGGGGAGTATTTTATTATTTAGCCTAAGTTTAGGGGGATTTTCGTAATTTACCCTTAATTAAA

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