SE3520253

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6471
  • Mimulus guttatus
  • SE3520253
  • Mutator
  • M15
  • scaffold_8:19742996-19743388
  • TAATTTTAA
  • AGGGTAAATAACACTTAAACCCCTCTGTGGTTACAAGCTTTTGCAGATGACTCCCTTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATTTTA                 AA     ---            GC             T C     ACTAG               ----  G                  --                               C     TC      CT     ------AGGG  -  CTGCAAAAATGAAAGGGAAA
        AGGGTAAATAACACTTA  CCCCT   CTGTGGTTACAA  TTTTGCAGATGAC C CTTGT     TAATATCAGCACATA    AC CTCTTGTGGTTTAGGGGG  TAGCTTCCGTTAGTTTTTTCGTCAAACTTAA CGCAT  GTCAAA  TCAAG          TC AT                    
        |||||||||||||||||  |||||   ||||||||||||  ||||||||||||| | |||||     |||||||||||||||    || ||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||  ||||||  |||||          || ||                    A
        TCCCATTTATTGTGAGT  GGGGA   GACACTAATGTT  AAAACGTCTACTG G GAACA     ATTATAGTCGTGTAT    TG GGGAACACTAAATCCCCC  ATCGAAGGCAATTAAAAAGGCAGTTTGAATT GCGTA  CAGTTT  AGTTT          CC TC                    
AATTTTAA                 TG     CAG            GT             T A     CCAGA               TAAT  G                  CA                               A     CA      AC     CATAAAAAAA  G  TACTGGGGGAACACGAATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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