SE3520254

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6472
  • Mimulus guttatus
  • SE3520254
  • Mutator
  • M3
  • scaffold_8:6511041-6511483
  • TTTATATTA
  • TATATTAGGGTAAATTACACCCAAACCCCTGAGGTATGCTTAAATAACTTTAAGGTCCCTGTGGTATCGATAATTACACTCACCCCCTTGAAACGTAGTTATAAATTCTAATGGGATAATGCATTGGATACGTTATTACGATAGAGTTCTAACGGACTATTGGTTTCAGGAAGTGGTGGAGACAACAAAGAGTTATGGGTGATTTA

Secondary structure and sequence

TSD    TIR
5'



3'
 TT    TT             C   A                       C                                        T            T                                   AC     A       C         G   C  GA         GAC    A           T  T   AGAAATAT     -  GCC
   TATA  AGGGTAAATTACA CCA ACCCCTGAGGTATGCTTAAATAA TTTAAGGTCCCTGTGGTATCGATAATTACACTCACCCCCT GAAACGTAGTTA AAATTCTAATGGGATAATGCATTGGATACGTTATT  GATAG GTTCTAA GGACTATTG TTT AG  AGTGGTGGA   AACA AGAGTTATGGG GA TTA        TGGGG GA   
   ||||  ||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  ||||| ||||||| ||||||||| ||| ||  |||||||||   |||| ||||||||||| || |||        ||||| ||    
   ATAT  TCCCATTTAATGT GGT TGGGGACTCCATACGAATTTATT AAATTCCAGGGACACCATAGCTGTTAATGTGAGTGGGGGA CTTTGCATCAAT TTTGAGATTGCCCTATTACGTAACCTATGTAATAA  CTATC CAAGATT CCTGATAAT AAA TC  TCACCACCT   TTGT TCTCAATACCC CT AAT        ACCCC CT   
ATT    -T             A   G                       A                                        -            C                                   GC     C       A         G   A  GA         ATA    A           -  C   --------     A  GTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End