Plant MITE

SE3550255

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6473
Mimulus guttatus
SE3550255
PIF/harbinger
To8
scaffold_12:19558188-19558533
TTA
AGAGGGTGTTTGGCTAAGCTTAT

Secondary structure and sequence

TSD TIR

5'

3'

TT                       AAGATGTTAAA       -  -    ATGTTTTAGAGCTTATAAGCTCTTCCAAAGTGTTTGGTAAATTTTTAGAAAAAGATCTTAATTTTTTAAAAAATAAGCTGTTGGAGAGCAAATAAAATCTTTTTAAATAAGTACCTCTACCCCACC
  AGAGGGTGTTTGGCTAAGCTTAT           AGGAGCT TA TAAG                                                                                                                              
  |||||||||||||||||||||||           ||||||| || ||||                                                                                                                              T
  TCTCCCACAAACCGATTCGAATA           TTGTCGA TA TCGA                                                                                                                              
AT                       -------AAAT       C  T    GAATGCAGACTATTCTACAAAATTCTCGACTATTCGACAATGTAAAATAAAAATCCTAATTAAAAATCTCACAAACCTATTACTCGAATAAAGGATAAAAATGAGTAATTTTCTAGAATTTATTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550255

TTAGAGGGTGTTTGGCTAAGCTTATAAGATGTTAAAAGGAGCTTATAAGATGTTTTAGAGCTTATAAGCTCTTCCAAAGTGTTTGGTAAATTTTTAGAAAAAGATCTTAATTTTTTAAAAAATAAGCTGTTGGAGAGCAAATAAAATCTTTTTAAATAAGTACCTCTACCCCACCTTTTTATTTAAGATCTTTTAATGAGTAAAAATAGGAAATAAGCTCATTATCCAAACACTCTAAAAATTAATCCTAAAAATAAAATGTAACAGCTTATCAGCTCTTAAAACATCTTATCAGACGTAAGAGCTTATCAGCTGTTTAAAATAAGCTTAGCCAAACACCCTCTTA

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