SE3530257

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6475
  • Mimulus guttatus
  • SE3530257
  • hAT
  • Hat18
  • scaffold_7:12728110-12728548
  • TGTGTAGT
  • CTTTGTTACATAGACACGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TGTGTAGT  T                --CAATTTG    AAACGCGCGGAAACCCTTCAGATACTTCAGTGGGCCGTGTCTGTAATTTCCCAAAAGTTGGACACGCGTATCAGTAAAAAAAAACCTTTTTTTTTTACCAAGAAAAGCCTAAACTCAACTAAAAAACCCCTCTTTTATTCATTTTTCTCACATCTTATTATTCTAAGCCAGTAAGTTCAC
        CT TGTTACATAGACACGG         ATGG                                                                                                                                                                                    
        || ||||||||||||||||         ||||                                                                                                                                                                                    A
        GA ACAATGTATCTGTGTC         GTGC                                                                                                                                                                                    
TGATGTGT  T                CATGCCCCT    CGCTATGCACCTATGCCTGTGCCCCTTTGTAAAATAGTTTTTTTTGTCCTGTGCCCTTGCACCCCCTATGCACAGTTATATTTTTTTATATCCCCATGTAAAATATTAAAAATTTTTAATGAAAATAATAATTATTACGTCAAATGAATATTAAAAATAATTCAATAAGTTTATTTATGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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