Plant MITE

SE3550258

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6476
Mimulus guttatus
SE3550258
PIF/harbinger
To8
scaffold_12:25112778-25113123
TTA
AGAGGGTGTTTGGCTAAGCTTAT

Secondary structure and sequence

TSD TIR

5'

3'

TT                       ---TTTA      - GATA         GTCTGATAAGATGTTTTAAGAGCTGATAAGTTGTTACATCTTATTTTTAGGATTAATTTTTTGAGTGTTTGGATAATGGGCTTATTTCCTATTTTTACTCATTAAAAGATCTTAAATAAAAAGG
  AGAGGGTGTTTGGCTAAGCTTAT       AACAGC T    AGCTCTTAC                                                                                                                            
  |||||||||||||||||||||||       |||||| |    |||||||||                                                                                                                             
  TCTCCCACAAACCGATTCGAATA       ATTTTC T    CGAATATTC                                                                                                                            
AT                       TTCTACA      C ----         TACAAAATCTCGAATATTCGAGAAAGTTTCACAAACCATTAAAAAATCTTTTTCTAGAATAAAAAAAAATTTTATTCGACAACCTCTCGTTTATTCTAGAAAAATTTATTCATGGAGATGGGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550258

TTAGAGGGTGTTTGGCTAAGCTTATTTTAAACAGCTGATAAGCTCTTACGTCTGATAAGATGTTTTAAGAGCTGATAAGTTGTTACATCTTATTTTTAGGATTAATTTTTTGAGTGTTTGGATAATGGGCTTATTTCCTATTTTTACTCATTAAAAGATCTTAAATAAAAAGGTGGGGTAGAGGTACTTATTTAAAAAGATCTTATTTGCTCTCCAACAGCTTATTTTAAAAAAAAATAAGATCTTTTTCTAAAAAATTACCAAACACTTTGAAAGAGCTTATAAGCTCTAAAACATCTTATAAGCTCCTTTTAACATCTTATAAGCTTAGCCAAACACCCTCTTA

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