SE3520259

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6477
  • Mimulus guttatus
  • SE3520259
  • Mutator
  • M8
  • scaffold_9:2151792-2152259
  • TATATATTA
  • ATATATTAGGGTAAATTATAACCACTCCCTGAGGTATGGTCAAATTACGAAAACTCCCTTCCTGTTTGGGTAATTACA

Secondary structure and sequence

TSD    TIR
5'



3'
 T      T                     C  A                     CT   T  C                -ACCA            A       G     G  C   C   C   T  A       TGG    T        A     A TA     AAT       C      ATCCCC   GA CTCCACATTTTGAAGCAAGATGATCATAAGATATGTTTTTCG
  ATATAT AGGGTAAATTATAACCACTCC TG GGTATGGTCAAATTACGAAAA  CCC TC TGTTTGGGTAATTACA     CCCCTCAACTAT AATCTTC TACAC TC ATC TTG GGT TC AATTTAG   AATC TCTAGATT TATGG A  TTCTC   TTTGTAC TGTTTT      TTC  G                                          
  |||||| ||||||||||||||||||||| || |||||||||||||||||||||  ||| || ||||||||||||||||     |||||||||||| ||||||| ||||| || ||| ||| ||| || |||||||   |||| |||||||| ||||| |  |||||   ||||||| ||||||      |||  |                                           
  TATATA TCCCATTTAATGTTGGTGGGG AC CTATACCAGTTTAATGCTTTT  GGG AG ACAAACCTATTAATGT     GGGGAGTTGATA TTAGAAG ATGTG AG TGG AAC CCA AG TTAAGTT   TTAG AGATCTAA GTACC T  AAGAG   AAACATG GCAAAA      ACG  T                                          
AT      -                     A  C                     TT   T  A                AAATA            C       A     G  A   A   A   C  G       GTA    T        G     C TC     ATT       A      -----C   -- TTTTATGTCAAAGACCACGTGGTGTTAGACTCTATATGTTCG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End