Plant MITE

SE3520261

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6479
Mimulus guttatus
SE3520261
Mutator
M34
scaffold_10:7004024-7004638
TAAAAACAA
AGGGTTAAATACATAAACACCCCTGTACTATGGAGTTTGTATCAAATACCCCCCTGTACTACACATAAATACAAAAACCCCCCTTACATTACATTTGTTTCAAAATATGACGAAAATACCCCTACTCAAGC

Secondary structure and sequence

TSD TIR

5'

3'

TAAAAACA             T        C                                                  A                      G              GAA         A  CA   ------------A         ATATATATATAAAGGTTTGTTTGAGCCATTTTCAGTCAATTTTACGTGCGAAGTTTTGGTATTTATATTTTTTTCTCCAAAACATCTAATTGCTTATATTTTTTTAATTTTATGATAAAAAAACTTTTATTTTTGTCATTTTGCAATCCTATG
        AGGGTTAAATACA AAACACCC TGTACTATGGAGTTTGTATCAAATACCCCCCTGTACTACACATAAATACA AAACCCCCCTTACATTACATTT TTTCAAAATATGAC   AATACCCCT CT  AGC             TTTATATAT                                                                                                                                                         
        ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||   ||||||||| ||  |||             |||||||||                                                                                                                                                          
        TCCCAATTTATGT TTTGTGGG ACATGATACCTCAAACATAGTTTATGGGGGGACATGATGTGTATTTATGT TTTGGGGGGAGTGTAATGTAAA AAAGTTTTATACTG   TTATGGGGA GA  TCG             TCAAACAAA                                                                                                                                                         
AACAAAAA             T        T                                                  A                      A              ATC         C  -A   GATATTTAATTTA         CTCAGTAAAAAGTGATATAAAAATTATAAAAGCCAGATAAAATGAACCCTTTAAAACTATAAATATAAAAAAAGATGTTTTGTAATTTAATGAATCAAAAAGAAAGAGTTATTTTGGAAAATAAAAGAAGGCCATCAAGTTTAAGAGTTGTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520261

TAAAAACAAGGGTTAAATACATAAACACCCCTGTACTATGGAGTTTGTATCAAATACCCCCCTGTACTACACATAAATACAAAAACCCCCCTTACATTACATTTGTTTCAAAATATGACGAAAATACCCCTACTCAAGCATTTATATATATATATATATAAAGGTTTGTTTGAGCCATTTTCAGTCAATTTTACGTGCGAAGTTTTGGTATTTATATTTTTTTCTCCAAAACATCTAATTGCTTATATTTTTTTAATTTTATGATAAAAAAACTTTTATTTTTGTCATTTTGCAATCCTATGATTGTTGAGAATTTGAACTACCGGAAGAAAATAAAAGGTTTTATTGAGAAAGAAAAACTAAGTAATTTAATGTTTTGTAGAAAAAAATATAAATATCAAAATTTCCCAAGTAAAATAGACCGAAAATATTAAAAATATAGTGAAAAATGACTCAAACAAACTATTTAATTTATAGGCTAAGCAGGGGTATTCTAGTCATATTTTGAAAAAAATGTAATGTGAGGGGGGTTTATGTATTTATGTGTAGTACAGGGGGGTATTTGATACAAACTCCATAGTACATGGGTGTTTTTGTATTTAACCCTAAAAACAA

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