SE3520262

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6480
  • Mimulus guttatus
  • SE3520262
  • Mutator
  • M3
  • scaffold_9:13433830-13434272
  • TTAATTATT
  • TAATTATTGGGTAAATTATACCTACACCCCTGAGGTATGTTAAAATACTTTAAGGTTCCTGTAGTATCGATAATTACAATTACCCCCTGAAA

Secondary structure and sequence

TSD    TIR
5'



3'
  T      TT                     C                 -               A    C A    T   A   -C         ------C   --   AGAAACTATAACAGAATAATACATTGGATAAGTCATTCCGTTAGGGTTCTAACGAACTATTATTTTACTGTTGTGGTGGAGACAGCATAAAGTTAGGGAATGACATGGATCTCCTA
   TAATTA  GGGTAAATTATACCTACACCC TGAGGTATGTTAAAATA CTTTAAGGTTCCTGT GTAT G TAAT ACA TTA  CCCCTGAAA       GTT  GTT                                                                                                                    
   ||||||  ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| | |||| ||| |||  |||||||||       |||  |||                                                                                                                     
   ATTAAT  CCCATTTAATGTGGATGTGGG GCTCCATATGATTTTAT GAAATTCCAGGGACA CATA C ATTA TGT AGT  GGGGACTTT       GCC  GGT                                                                                                                    
TTT      -T                     A                 T               C    A C    T   C   AT         ATTAATC   TC   TCTAAAGTACAAAACACCTGGCTATACGAGATATAAATAAAGGGCGCCCTGGCAATTACCTTGATATCTGCGTTTAAATATTTAGAGTATATTTTATTATTCCTACATTCTTTACA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End