SE3520263

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6481
  • Mimulus guttatus
  • SE3520263
  • Mutator
  • M2
  • scaffold_14:3721946-3722404
  • TACTTTTAA
  • AGCGTAAATTACGGCCACTCTCATGAGGTAAGGTCAAATTACGAAAAAATCTCTCCTGTTTGAGTAATTACAACCACCCCTCAACTATGAATCTTCTTACACGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTTTTA  C             A    CA              A                CC      A                            TC               AATTCAACATAATCTTTTACATTCAGTGGAATGTTCTCTAGTTTGGTACTCGTTTTGTGCAAAAATGTAGTTTCTGATGCACCTCAATCTCAATCTGATATAACAAGCCAAGAGA
        AG GTAAATTACGGCC CTCT  TGAGGTAAGGTCAA TTACGAAAAAATCTCT  TGTTTG GTAATTACAACCACCCCTCAACTATGAA  TTCTTACACGTGTCA                                                                                                                   
        || ||||||||||||| ||||  |||||||||||||| ||||||||||||||||  |||||| ||||||||||||||||||||||||||||  |||||||||||||||                                                                                                                    
        TC CATTTAATGCCGG GGGA  ACTCCATTCCAGTT AATGCTTTTTTGGGGA  ACAAAC CATTAATGTTGGTGGGGAGTTGATACTT  AAGAATGTGCAGGTG                                                                                                                   
AATTTTCA  C             C    --              A                -A      C                            TA               GGAACGCCACAGTTTAAATTACTTTAAAAGATCTAATGTACCTTATAATAGAACAAACATGGGCAAAATGAGGTAAGCTCGAGGTTTAAAACTTTGTTCTACTAGTATTCTACAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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