SE3520264

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6482
  • Mimulus guttatus
  • SE3520264
  • Mutator
  • M20
  • scaffold_2:15785232-15785727
  • TAACAAAAT
  • GGGAAAATTGTAATTTTGGACCTATATGTTGGTCTCTTTAGGGATTTAGTCCTATAAGTTGTC

Secondary structure and sequence

TSD    TIR
5'



3'
TAACAAAAT  G         A      A   A           C                 A   G     TTATTTCAA             A   ATACAAAAT              A     CA T   AC     A     --  CA     TAATGATGTACGTAACAAACTCGCAGAAATTTATTTATATGGACACTTAAAAATTATAAATGCTTCTCTAATTTGGTTTATAGATGTGTCGT
         GG AAAATTGTA TTTTGG CCT TATGTTGGTCT TTTAGGGATTTAGTCCT TAA TTGTC         TTTTGCATGCAAT ACT         TAGTATTTTTAGTC TATTT  C CGA  TTTGA TTTTA  GC  ACGTT                                                                                            
         || ||||||||| |||||| ||| ||||||||||| ||||||||||||||||| ||| |||||         ||||||||||||| |||         |||||||||||||| |||||  | |||  ||||| |||||  ||  |||||                                                                                            C
         CC TTTTAACAT AAAACC GGA ATATAACCGGA AAATCCTTAAATCAGGA ATT AACAG         AAAATGTACGTTA TGA         ATCATAAAAATCAG ATAAA  G GCT  AAATT AAAAT  TG  CGCAG                                                                                            
TAAAACAAT  G         C      A   G           T                 G   G     TACAAAATC             A   AACATTTAT              G     AC T   AA     -     GC  --     TTTATTTGAACTGCGTAAAAATGAATATGTCTGCGAACCTTTAACTATTAAAGCTATAGATTAAATGGTAACCATCTTGAAATTAATACACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End