SE3530265

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6483
  • Mimulus guttatus
  • SE3530265
  • hAT
  • Hat18
  • scaffold_2:13773868-13774332
  • GTTCTATT
  • TCTATGTTACATAGACACGG

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTCTAT   A           C    GAAC     CACGGCGACACACAGACAC           AACCTTTAATCAAAAAAAGTAGGACACGGGAACGTGGGGGATACGTGTAAATATTAAAAATAAAGGGGTCTATTTGTAAATTATTAAAAAAGTTCTTTTGCTTTTTTACAATATTAAAATCATAATATAGTTGGAAAGAGAAAAGAATAATACTGCACTAGGCACAACGTGG
       TCT TGTTACATAGA ACGG    GGGGA                   GGACACGGGGA                                                                                                                                                                            
       ||| ||||||||||| ||||    |||||                   |||||||||||                                                                                                                                                                             
       GGA ACAATGTATCT TGCC    TCCCT                   GGGCACAGTCT                                                                                                                                                                            
TTATCTT   C           A    GATT     -----------TTTCAAAG           ATGCAAAGACTGTGCTTTGCGCTACTATGCGCATAATATGCGACCACCCCGCATAGACATTATAAATTTATCAACCTGTGCCCATAGATATTAACTGTGTGCACAGTTTCTTCATTTTTTTCCGAAAAAGACTTTCTCGGGTTTGGATAAGATGAAGACGGTAAAAATAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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