SE3520266

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6484
  • Mimulus guttatus
  • SE3520266
  • Mutator
  • M8
  • scaffold_8:24690970-24691445
  • TATTTTCTA
  • TAGGGTAAATTACGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTTC               ACAAA  C     C                AC   AAAAAAAATCCTCATATCCCCCTCAACTATGAATCTTCTTACACGTCCACTCTTGTGGTGTCAAGTGCACCCTTGTGGTATCAAATTCAACAGATCTTTTACATTCCGTGGAATGTTCTCTAGTTTGTACTCGTTTTGTGCAAAAATGCAGTTTTTGATGCACCAAAATCTGATATTTTACAAG
       TAGGGTAAATTACGG     CC CCCCT GAGGTAAGGTCAAATT  GAG                                                                                                                                                                                        
       |||||||||||||||     || ||||| ||||||||||||||||  |||                                                                                                                                                                                        C
       ATCCCATTTAATGCC     GG GGGGA CTCCATTCCAGTTTAA  ACG                                                                                                                                                                                        
ATCTTTT               -----  T     -                -A   TTTTTGGGGTGTACAAACCCATTAATGTCAGTGGGGTTGATACTTAGAAGGATGTGCAGGTGGGAACGCCACAGTTTAAATCACCTTAGAAGATCTAATACACCTTATAAGAGGTCAAACATGGACAAAATGGGGTAAGCTCGAGGTGTACAACTTTGTTCTACTATTATTCTACACATAAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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