Plant MITE

SE3520267

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6485
Mimulus guttatus
SE3520267
Mutator
M2
scaffold_14:3371976-3372259
AATTATTTA
GGTCAAATTACGGGCACCCCC

Secondary structure and sequence

TSD TIR

5'

3'

AATTATTTA  T       C  G  -      A    T CTCAAATTACAAAAAAGACCCTCATGTTTGGATATTTACAATCACCCCCCTCAACTATAAATTGTCTTACACATCCACCCTTACGGTTTCAAATTTACATGCTG
         GG CAAATTA GG CA CCCCCG GGTA G                                                                                                        
         || ||||||| || || |||||| |||| |                                                                                                        A
         CC GTTTAAT CC GT GGGGGT CCCA T                                                                                                        
ATTTATTAA  C       A  G  T      -    - TCGAGTGGGGGTCCCCATTCGAGTTTAATGCTTTTTTAGGGAGTATAAACCTATTAATGTTGGTGGGGGGAGTTGATACATAACAGAATACTTTTTGGGGAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520267

AATTATTTAGGTCAAATTACGGGCACCCCCGAGGTATGCTCAAATTACAAAAAAGACCCTCATGTTTGGATATTTACAATCACCCCCCTCAACTATAAATTGTCTTACACATCCACCCTTACGGTTTCAAATTTACATGCTGAATAAGGGGTTTTTCATAAGACAATACATAGTTGAGGGGGGTGGTTGTAATTATCCAAATATGAGGGATTTTTTCGTAATTTGAGCTTACCCCTGGGGGTGAGCTTACCCTGGGGGTTGGCCATAATTTGCCCAATTATTTA

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