SE3520268

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6486
  • Mimulus guttatus
  • SE3520268
  • Mutator
  • M8
  • scaffold_14:8165297-8165761
  • TTAATTTTA
  • AGGGTAAATTACAACCACCCCCTGAGGTATGGTCAATTTACGAAAAAACCCCTCTTGTTTGGATAATTACATCTATCCCTCAACTATGATTTTTTCTTACACCTCCACCCTTATGGTGTCGAATT

Secondary structure and sequence

TSD    TIR
5'



3'
TTAATTTT      A              C              T        AAA              A        T                 TTT   C     CC         A    G       CAACAT    A  T     T          GC  TAG             -     AAAAATACAGTTTTTGATGCACCACAATCTGATATATACAAGCCAA
        AGGGTA ATTACAACCACCCC TGAGGTATGGTCAA TTACGAAA   CCCCTCTTGTTTGG TAATTACA CTATCCCTCAACTATGA   TTT TTACA  TCCACCCTT TGGT TCGAATT      AATC TC AGATT TGTGGAATGT  TC   TTTGTACTCGTTT TGTGT                                              
        |||||| |||||||||||||| |||||||||||||| ||||||||   |||||||||||||| |||||||| |||||||||||||||||   ||| |||||  ||||||||| |||| |||||||      |||| || ||||| ||||||||||  ||   ||||||||||||| |||||                                               
        TCCCAT TAATGTTGGTGGGG ACTCCATACCAGTT AATGCTTT   GGGGAGGACAAACC ATTAATGT GGTGGGGAGTTGATATT   AAA AATGT  AGGTGGGAA GCCA AGTTTAA      TTAG AG TCTAA ATACCTTATA  AG   AAACATGGGCAAA TAGGG                                              
ATTTTAAT      A              -              T        --G              C        T                 TAT   -     TC         C    A       ATCACC    A  C     T          AT  TGA             A     TAAGCTTGAGGTGTAAAACTTCGTTCTACTAGTATTCTACACAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End