SE3520269

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6487
  • Mimulus guttatus
  • SE3520269
  • Mutator
  • M35
  • scaffold_4:19311598-19311852
  • TAATATTAG
  • TAATATTAGGAGTTTATTGCATTTAGTACCCCTGTGTTATACCACATTGCTAAAATACTCCTCGTGTTATAAATATTAGCAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
        A  A                        G  A   - AC    C     --T         G  A         G     AGAA ----   G         A     -GAA    G    TGCT
 TAATATT GG GTTTATTGCATTTAGTACCCCTGT TT TAC C  ATTG TAAAA   ACTCCTCGT TT TAAATATTA CAAAA    C    GAT CATTTTTTT GCAAA    CCCC TAAA    
 ||||||| || |||||||||||||||||||||||| || ||| |  |||| |||||   ||||||||| || ||||||||| |||||    |    ||| ||||||||| |||||    |||| ||||     
 ATTATAA CC CAAATAACGTAAATCGTGGGGACA AA ATG G  TAAC ATTTT   TGAGGAGCA AA ATTTATAAT GTTTT    G    CTA GTAAAAAAA CGTTT    GGGG ATTT    
G       G  -                        G  -   A AC    A     TTT         G  G         G     AGGG GATA   A         G     GACG    G    TGCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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