Plant MITE

SE3550270

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6488
Mimulus guttatus
SE3550270
PIF/harbinger
To1
scaffold_10:18308008-18308273
TTA
AGGTGGTGTTTGCAAAAGCTT

Secondary structure and sequence

TSD TIR

5'

3'

TT                     ATTTAAAA     AGTTAGT           -------------AAGTT   ---  TAAGTGATTATTCCTAAAAGTTGGGGGTGTTTGCAAATTAGCTGGAAAATCAATTAAATGGGTGCT
  AGGTGGTGTTTGCAAAAGCTT        GCAGA       GATTGTGAGTT                  GGA   AT                                                                  
  |||||||||||||||||||||        |||||       |||||||||||                  |||   ||                                                                  T
  TCCACCACAAACGTTTTCGAA        CGTTT       CTAATACTCAA                  CAA   TC                                                                  
AT                     ------AA     -----AT           AAAAAGACGTGTATTAGA   AAA  CACAAACGTGTTATTCGAAAACGAAAACGAAGAGAATTTTATTCAACGAAATTCGATATTAAAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550270

TTAGGTGGTGTTTGCAAAAGCTTATTTAAAAGCAGAAGTTAGTGATTGTGAGTTAAGTTGGAATTAAGTGATTATTCCTAAAAGTTGGGGGTGTTTGCAAATTAGCTGGAAAATCAATTAAATGGGTGCTTTTAAAATTATAGCTTAAAGCAACTTATTTTAAGAGAAGCAAAAGCAAAAGCTTATTGTGCAAACACCTAAAAACAGATTATGTGCAGAAAAAAACTCATAATCTATTTGCAAAAGCTTTTGCAAACACCACCTTA

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