SE3520272

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6490
  • Mimulus guttatus
  • SE3520272
  • Mutator
  • M3
  • scaffold_10:9302302-9302745
  • TATAATATA
  • TATAATATAGGGTAAATTACACCTACACCCCTGAGGTATGCTTAAATAACTTTAAGGTCCCTGTGGTATCGATAATTACACTCACCCCCTTGAAACGTAGTTATAAAATCTAATGGGATAATGCATTGGATACATTATTACGATAGATTTCTAATGGACTATTGGTTTCAGGAAGTGGTGGAGACAACAAAGAGTTATGGGTGA

Secondary structure and sequence

TSD    TIR
5'



3'
    A                                            C                              C                      T   A                              TA      AT                G   C  GA           C    A           T  TTTAAGAAA  T     -  GCC
TATA TATAGGGTAAATTACACCTACACCCCTGAGGTATGCTTAAATAA TTTAAGGTCCCTGTGGTATCGATAATTACA TCACCCCCTTGAAACGTAGTTA AAA TCTAATGGGATAATGCATTGGATACATTAT  CGATAG  TTCTAATGGACTATTG TTT AG  AGTGGTGGAGA AACA AGAGTTATGGG GA         TA TGGGG GA   
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||  ||||||  |||||||||||||||| ||| ||  ||||||||||| |||| ||||||||||| ||         || ||||| ||    
ATAT ATATCCCATTTAATGTGGGTGTGGGGACTCCATACGAATTTATT AAATTCCAGGGATACCATAGCTATTAATGT AGTGGGGGGATTTTGCATCAAT TTT AGATTGCCCTATTACGTAACCTATGTAATA  GCTATC  AAGATTACCTGATAAT AAA TC  TCACCACCTCT TTGT TCTCAATACCC CT         AT ACCCC CT   
    A                                            A                              C                      C   G                              AG      CC                G   A  GA           A    A           -  --------C  T     A  GTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End