SE3520273

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6491
  • Mimulus guttatus
  • SE3520273
  • Mutator
  • M35
  • scaffold_4:4718107-4718374
  • GTTCTAAAT
  • GGGTTTATTGCATTTAGCACCCCTGTGTT

Secondary structure and sequence

TSD    TIR
5'



3'
GTTCTAAATT                     CC      TACT    -    C      G A  C               ---  -C    TC   C       T  A    A      A  -T    A   AAAACG
          GGGTTTATTGCATTTAGCACC  TGTGTT    TCAA TTGT AAAAAA T CC CGTGTTATAGATATT   AG  AAAA  CTC TTATGGT CA TTTT TTAGCA AC  ACCC CTA      
          |||||||||||||||||||||  ||||||    |||| |||| |||||| | || |||||||||||||||   ||  ||||  ||| ||||||| || |||| |||||| ||  |||| |||      C
          CTCAAATGACGTAAATCGTGG  ACACAA    AGTT AACG TTTTTT A GG GCACAATATTTATAA   TC  TTTT  GAG GATGCTA GT AAAA GATCGT TG  TGGG GAT      
 TAAATCTTG                     AT      -CAT    T    A      G -  A               ACT  TT    TT   A       C  A    A      G  TT    G   CTACGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End