SE3520274

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6492
  • Mimulus guttatus
  • SE3520274
  • Mutator
  • M2
  • scaffold_2:12652576-12653039
  • TATTAATTT
  • TATTAATTTGGGTAAATTGCTACCACCTCTTGAGGTATGGTACGAAAAAACCCCTCCTGTTTGGGTATTTACAACCACCCATCAACTATAAATCTTCTTACACGTCCACCCTTGCAGTGTCAAATTTAGTGGAATCTTCTAGATTATATGGAATATTCTAAATTTTGTACCCGTT

Secondary structure and sequence

TSD    TIR
5'



3'
        TT           T     - T  T          ------         CC    C          T       C    A        A                        CA             TGG             A      --ATA     AA       CC    ATATCCCATTCGA   C  TGTACATTTTGAAGCAAGATGATCATAAGATGTGTTTTTGG
 TATTAAT  GGGTAAATTGC ACCAC C CT GAGGTATGGT      ACGAAAAAA  CCTC TGTTTGGGTA TTACAAC ACCC TCAACTAT AATCTTCTTACACGTCCACCCTTG  GTGTCAAATTTAG   AATCTTCTAGATT TATGGA     TTCTA  TTTTGTA  CGTT             GCT CA                                         
 |||||||  ||||||||||| ||||| | || ||||||||||      |||||||||  |||| |||||||||| ||||||| |||| |||||||| ||||||||||||||||||||||||  |||||||||||||   ||||||||||||| ||||||     |||||  |||||||  ||||             ||| ||                                         C
 GTAATTA  CCCATTTAATG TGGTG G GA CTCCATACCA      TGCTTTTTT  GGAG ACAAACCTAT AATGTTG TGGG AGTTGATA TTAGAAGAATGTGCAGGTGGGAAT  CACAGTTTAAGTT   TTAGAAGATCTAA GTACCT     AAGAT  AAAACAT  GCAA             ATA TG                                         
T       -T           T     T T  -          GTTTAA         AA    T          T       A    A        C                        AC             GTA             A      GACAA     --       TA    ------------A   -  TTTTTATGTCAAATACTACGTGGTGTTAGACTATATATGTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End