SE3520276

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6494
  • Mimulus guttatus
  • SE3520276
  • Mutator
  • M11
  • scaffold_10:9872279-9872466
  • CGCACACTT
  • TGGGGAGTTAGATGTTACACCTGATTATTTACATCGGGTGGATTTGAACC

Secondary structure and sequence

TSD    TIR
5'



3' 
CGCACACT  -                     A          C               ATAGATTTGATTAG   A    C   -TAA       TA AC
        TG GGGAGTTAGATGTTACACCTG TTATTTACAT GGGTGGATTTGAACC              ATA CTAT CAT    GCACACA  C  
        || ||||||||||||||||||||| |||||||||| |||||||||||||||              ||| |||| |||    |||||||  |  A
        AC CTTTTAATCTACAATGTGGAC AATAAATGTG CCCACTTAAACTTGG              TAT GATA GTA    TGTGTGT  G  
 TTCACAC  G                     C          A               ------------CG   A    T   TTAG       AG GT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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