Plant MITE

SE3550280

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6498
Mimulus guttatus
SE3550280
PIF/harbinger
To2
scaffold_13:20847054-20847279
TTA
AGGCCTCGTTTGGTTGGGGAGATTAG

Secondary structure and sequence

TSD TIR

5'

3'

TT                -----GG        --------   TT  TAACTAAATAATAGTTAATTGGACTTTGTTTGATGTTTGGTATCCCTGATAACTTGTCGGGTCGACAGTCGA
  AGGCCTCGTTTGGTTG       GAGATTAG        CCA  AT                                                                        
  ||||||||||||||||       ||||||||        |||  ||                                                                        C
  TCCGGAGCAAACCAAC       TTCTAGTC        TCT  AA                                                                        
AT                GATTCTA        AGTTCTAT   --  TTTATTAGGTACCAGGTTGTTTTTTTTGAGGGATTTTCTATTCTATTCGGTACTATTGTATTAATGAACGCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550280

TTAGGCCTCGTTTGGTTGGGGAGATTAGCCATTATTAACTAAATAATAGTTAATTGGACTTTGTTTGATGTTTGGTATCCCTGATAACTTGTCGGGTCGACAGTCGACACGCAAGTAATTATGTTATCATGGCTTATCTTATCTTTTAGGGAGTTTTTTTTGTTGGACCATGGATTATTTAATCTTATCTTGACTGATCTTATCTTAGCAACCAAACGAGGCCTTA

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