Plant MITE

SE3520281

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6499
Mimulus guttatus
SE3520281
Mutator
M1
scaffold_2:3981054-3981303
ATACTTTTT
TGGAGTTTATTGCAATTAGTACCCATGTGTTACATCAAATTGCTAAAAAACTACCCTATATTATTTTATTGGCAAAACCTCCCGTATGATTTTTTTTAGCAATTAGCACCCCT

Secondary structure and sequence

TSD TIR

5'

3'

 ATACTTTT   A                    A       C   A                 -  TA                         G  -----               AT    A     GT
         TGG GTTTATTGCAATTAGTACCC TGTGTTA ATC AATTGCTAAAAAACTAC CC  TATTATTTTATTGGCAAAACCTCCC TA     TGATTTTTTTTAGCA  TAGC CCCCT  
         ||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||  ||||||||||||||||||||||||| ||     |||||||||||||||  |||| |||||   
         ACC CAAATAACGTTAATCATGGG GCACAAT TAG TTAACGATTTTTTGATG GG  GTAATAAAATAATCGTTTTGGGGGG AT     GTTAGAAAAAATCGT  ATTG GGGGA  
GTTTTTTAT   -                    -       A   C                 T  TA                         G  TCTAA               GT    -     TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520281

ATACTTTTTGGAGTTTATTGCAATTAGTACCCATGTGTTACATCAAATTGCTAAAAAACTACCCTATATTATTTTATTGGCAAAACCTCCCGTATGATTTTTTTTAGCAATTAGCACCCCTGTTTAGGGGGTTATGTGCTAAAAAAGATTGAATCTTAGGGGGGGTTTTGCTAATAAAATAATGATGGTGTAGTTTTTTAGCAATTCGATATAACACGGGGTACTAATTGCAATAAACCCATATTTTTTG

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