SE3520283

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6501
  • Mimulus guttatus
  • SE3520283
  • Mutator
  • M36
  • scaffold_14:19354621-19355041
  • TATTTTAAA
  • AGGGTAACTGGCATTTTGCACCCTGTAATTATACTCATTTGACACTTTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTTAA       C                G       A                 CTCTTAAATAA      TGAC    T               -------AAA     G       CATAA    -  AGTAGTACAATAAAAGGATTTAGGGAGAACTGAAAGGGTAAATTTGTGAATAAATTCATTACCAACCTTTTTAATTACTGAAAATTT
        AGGGTAA TGGCATTTTGCACCCT TAATTAT CTCATTTGACACTTTGA           AAAATA    AGAT GCACCCTCAAATTAA          GCATA TGCACCA     CCTA AA                                                                                       
        ||||||| |||||||||||||||| ||||||| |||||||||||||||||           ||||||    |||| |||||||||||||||          ||||| |||||||     |||| ||                                                                                       A
        TCCCATT ACCGTAAAACGTGGGA GTTAATA GAGTAAACTGTGAAACT           TTTTAT    TCTA CGTGGGAGTTTAATT          CGTGT ACGTGGT     TGTG AA                                                                                       
AAATTTTA       A                A       C                 -----------      --CA    T               CTAAACGAAC     A       -ATTC    A  AGACGATTTTAAACGCAAACTTTTGAACTAAAATGGTATTAAGTTACCTGTTTTACCAGTTAATAACAATTAAGTAGTCATTCTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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