Plant MITE

SE3520284

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6502
Mimulus guttatus
SE3520284
Mutator
M9
scaffold_3:14825339-14825644
AATATAAAA
TGGGAAAATCATATTTTTCACCCTCAAGTTTGCATTGATTTCATATTTG

Secondary structure and sequence

TSD TIR

5'

3'

AATATAAAA        TC   T      -                             -AC  --    TGTTTCAATAACATAACGCTTTTGGTCATCTCCGTCAATTTACCGTTAGTCCGTCAGTTAAGGCAATGATGGGCACACGCTGGAC
         TGGGAAAA  ATA TTTTCA CCCTCAAGTTTGCATTGATTTCATATTTG   CC  CTTA                                                                                     
         ||||||||  ||| |||||| |||||||||||||||||||||||||||||   ||  ||||                                                                                      
         ACCCTTTT  TGT AAAAGT GGGAGTTCAAACGTAACTAAAGTGTAAAC   GG  TACA                                                                                     
TAAAATATA        TA   C      A                             CAG  AG    AGTGTTTTTTGTGTAAGTCAGGGAGTACAAAGTTTTTACGTTGCAAAAATCAGTAAAGGCAGTTAAAAGGCAATTTTAATTGCCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520284

AATATAAAATGGGAAAATCATATTTTTCACCCTCAAGTTTGCATTGATTTCATATTTGACCCCTTATGTTTCAATAACATAACGCTTTTGGTCATCTCCGTCAATTTACCGTTAGTCCGTCAGTTAAGGCAATGATGGGCACACGCTGGACTCCGTTAATTTTAACGGAAAATTGACGGAAATGACTAAAAACGTTGCATTTTTGAAACATGAGGGACTGAATGTGTTTTTTGTGAACATGAGGGACCAAATGTGAAATCAATGCAAACTTGAGGGATGAAAACTGTATTTTTCCCAATATAAAAT

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