Plant MITE

SE3530286

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6504
Mimulus guttatus
SE3530286
hAT
Hat5
scaffold_10:4406197-4406755
CCCTGAAG
CCTGAAGTAGACATGGCCATGGGCCGGTTTTGGGCCCGG

Secondary structure and sequence

TSD TIR

5'

3'

C   G -A                        T     C  ---   C    CGAACCGGCCCGTTGACGACCCGGGCCAACCCGTTGACCGGTGAACCGGCCCGGAACCCGTGAACCGGCCCGTCGTCCCCGGGACGGGCCCGGTTCTATGAAATGGTGAACCGTGAACCGCAGGGCCGGCCCGGCGGTTCACCCGGATTTAAAAAAAAAAAAAAAAAAAAAATTCAAAAAAATTCAGAAAAAAAGCAAATAACGGCTAGTGAACCGGCCCGGGGTGAACCG
 CCT A  GTAGACATGGCCATGGGCCGGTTT GGGCC GG   AAC GGCC                                                                                                                                                                                                                                       
 ||| |  |||||||||||||||||||||||| ||||| ||   ||| ||||                                                                                                                                                                                                                                       A
 GGA T  CATCTGTGCCGGTGCCCGGCCAAG CCCGG CC   GCC CGGC                                                                                                                                                                                                                                       
    G CC                        -     -  AAA   -    CAAGTATGGCCAAGTGCCAAGTGAAAAAGGCCTTGGCCTTGGCCGGGCATTATTCGTGCCAAGCCCGACCAAGGCCCAGCCGGGCCTTTTAAACTTAAAAAATAAATTAAAAAAAAAAAACTTTATAAACTACTTATTCATTTAATATCCTTTTTAACCCCACACTCCCATAAATATCCTTTTTAACCCCCCCTTAAGTTTTTTTTCCTTTATTGCCGGCCAAGTGGGCCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530286

CCCTGAAGTAGACATGGCCATGGGCCGGTTTTGGGCCCGGAACCGGCCCGAACCGGCCCGTTGACGACCCGGGCCAACCCGTTGACCGGTGAACCGGCCCGGAACCCGTGAACCGGCCCGTCGTCCCCGGGACGGGCCCGGTTCTATGAAATGGTGAACCGTGAACCGCAGGGCCGGCCCGGCGGTTCACCCGGATTTAAAAAAAAAAAAAAAAAAAAAATTCAAAAAAATTCAGAAAAAAAGCAAATAACGGCTAGTGAACCGGCCCGGGGTGAACCGACCCGGGTGAACCGGCCGTTATTTCCTTTTTTTTGAATTCCCCCCCAATTTTTCCTATAAATACCCTCACACCCCAATTTTTCCTATAATTTACTTATTCATCAAATATTTCAAAAAAAAAAAATTAAATAAAAAATTCAAATTTTCCGGGCCGACCCGGAACCAGCCCGAACCGTGCTTATTACGGGCCGGTTCCGGTTCCGGAAAAAGTGAACCGTGAACCGGTATGAACCGGCCCGAAACCGGCCCGAACCGGCCCGTGGCCGTGTCTACCCTGAGG

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