Plant MITE

SE3520287

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6505
Mimulus guttatus
SE3520287
Mutator
M19
scaffold_5:20157993-20158745
GAAAAATCG
GGCTTAATTCCACTTTGCACCCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAAATAAATTAATAGCACTTTGCACCCTCGAAATACAATAAATCATGCATAATGCACCCCAAATGATTTTTTAAAG

Secondary structure and sequence

TSD TIR

5'

3'

GAAAAATCG                           A                               -TA                                        G             -AAA     TT      CTAAAAAA       TTAATATTTGTAGTGATATTTTTTTAGGATGCCAAATGTCAAATATTTTTTTTATTCATCAATCATTTTGAAACTATAAAGTTCAAAAATAAAAATACATTCCATCAACATATTTAAAAATTATATTGTTTTATCAAAATAAAATATTTTACGAAAAAAAAATCATTCAGCTATTACGTTATCAAGTTATCTGAAAATTATTTTTTCTTCCAAATATTTTCACCT
         GGCTTAATTCCACTTTGCACCCTTGAA TATACCATTTTGGCACTTTGCACCCTCGAAA   AATTAATAGCACTTTGCACCCTCGAAATACAATAAATCAT CATAATGCACCCC    TGATT  TTAAAG        TATAAAT                                                                                                                                                                                                                                 
         ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||||||||||    |||||  ||||||        |||||||                                                                                                                                                                                                                                  
         CCGAATTAAGGTGAAACGTGGGAACTT ATATGGTAAAACCGTGAAACGTGGGAGCTTT   TTAATTATCGTGAAACGTGGGAGTTTTGTGTTATTTAGTA GTGTTACGTGGGG    ACTAA  AATTTC        GTAAAAA                                                                                                                                                                                                                                 
GCTAAAAAG                           -                               TTA                                        A             GTTA     -T      -------C       TAAAAAGTAACCACAAAAAAGAAAACCCCATGTTTTATTTTTTTTTTAACAACAAAAGAACTTGGAGTTTGGATTAAAGCTCGCCTGTTTCACGCTTTTTTATTTTTAATGTGGCCTAATAAATTTTTTTTGATGTAATAGAATGTTTTCTTTTTATTTTTTTTATTAGAAAATAGTGATTTAATAAGCTAACACCTAGAAAATACAGTGACAAACATTTTATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520287

GAAAAATCGGGCTTAATTCCACTTTGCACCCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAAATAAATTAATAGCACTTTGCACCCTCGAAATACAATAAATCATGCATAATGCACCCCAAATGATTTTTTAAAGCTAAAAAATATAAATTTAATATTTGTAGTGATATTTTTTTAGGATGCCAAATGTCAAATATTTTTTTTATTCATCAATCATTTTGAAACTATAAAGTTCAAAAATAAAAATACATTCCATCAACATATTTAAAAATTATATTGTTTTATCAAAATAAAATATTTTACGAAAAAAAAATCATTCAGCTATTACGTTATCAAGTTATCTGAAAATTATTTTTTCTTCCAAATATTTTCACCTAATATTTTACAAACAGTGACATAAAAGATCCACAATCGAATAATTTAGTGATAAAAGATTATTTTTTTTATTTTTCTTTTGTAAGATAATGTAGTTTTTTTTAAATAATCCGGTGTAATTTTTATTTTTTCGCACTTTGTCCGCTCGAAATTAGGTTTGAGGTTCAAGAAAACAACAATTTTTTTTTTATTTTGTACCCCAAAAGAAAAAACACCAATGAAAAATAAAAATGCCTTTAATAATCAATTGGGGGTGCATTGTGAATGATTTATTGTGTTTTGAGGGTGCAAAGTGCTATTAATTATTTTTCGAGGGTGCAAAGTGCCAAAATGGTATATTCAAGGGTGCAAAGTGGAATTAAGCCGAAAAATCG

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