Plant MITE

SE3550288

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6506
Mimulus guttatus
SE3550288
PIF/harbinger
To2
scaffold_2:3725971-3726212
TCA
AGGCCTCGTTTGGTTG

Secondary structure and sequence

TSD TIR

5'

3'

TC                CCAAGATA      G   A   AA         -----ATCTAATG    CCAATTGTTTTATTGGACCTTGGAAGGTCCAACCAAAAACATGCTTAAAAAGGCAAGA
  AGGCCTCGTTTGGTTG        AGATTA CCA GAT  GACTAAATA             AAAA                                                          
  ||||||||||||||||        |||||| ||| |||  |||||||||             ||||                                                          T
  TCCGGGGCAAACCAAC        TCTAAT GGT CTA  TTGATTTAT             CCTA                                                          
AC                -----CCC      A   A   -A         CAACCTGAAACAA    CAAACCATAGGGGTTATTGAACGGCCCAGCTGGGCGTTTATAATACAATAGTACCGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550288

TCAGGCCTCGTTTGGTTGCCAAGATAAGATTAGCCAAGATAAGACTAAATAATCTAATGAAAACCAATTGTTTTATTGGACCTTGGAAGGTCCAACCAAAAACATGCTTAAAAAGGCAAGATAAGCCATGATAACATAATATTTGCGGGTCGACCCGGCAAGTTATTGGGGATACCAAACATCCAACAAAGTCCAACTATTTAGTTAATCATGGATAATCTCCCCAACCAAACGGGGCCTCA

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