SE3520289

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6507
  • Mimulus guttatus
  • SE3520289
  • Mutator
  • M2
  • scaffold_14:18020462-18020728
  • TATTAATTA
  • ATTAATTAGGGCAAATTACGGCCACCCCTGAGGTAAGCTCAAATTACGAAAAAACCCTCATGTTTGGGTAATTACAACCACCCCTCAACTATGTATTGTCTTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
 T      T                 --                      --C            A     G            C   -                      ACGTCC     TACGATG   A     CC
  ATTAAT AGGGCAAATTACGGCCA  CCCCTGAGGTAAGCTCAAATTA   GAAAAAACCCTC TGTTT GGTAATTACAAC ACC CCTCAACTATGTATTGTCTTAC      ATCCT       TCA ATTTA  
  |||||| |||||||||||||||||  ||||||||||||||||||||||   |||||||||||| ||||| |||||||||||| ||| ||||||||||||||||||||||      |||||       ||| |||||  T
  TAATTA TCCCGTTTAATGCCGGT  GGGGACTCCATTCGAGTTTAAT   TTTTTTTGGGAG ACAAA CTATTAATGTTG TGG GGAGTTGATACATAACAGAATG      TGGGG       AGT TAAAT  
GT      -                 AG                      CCT            A     G            A   A                      CTTTTT     -------   A     CA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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