SE3520291

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6509
  • Mimulus guttatus
  • SE3520291
  • Mutator
  • M4
  • scaffold_9:14596196-14596663
  • TTAATTTAA
  • TAATTTAAGGTCAAATTCCACTTTTGCCTCTTGTACTTTGGCTCAGTATCACTTTATCCCTTTTTATTGTCGATTGCATCAATTTGCCCCATGTACTTGAAAAATTGTCTCAATGTGGCCCTTGTTGTTAGTTTTCAGACATTTGACTTTACCACCGTTTGGTCTAAGGTCTGAAAATTACAGAAATACCAC

Secondary structure and sequence

TSD    TIR
5'



3'
T   T      T             TG                  A  A   C     C          G          CA       C A         A             G   -   TT            C    A       T  C   C       CTA  G              A   A    AAAAAA   ------------------AATTTTGCAGCATA   AACCACGGCA
 TAA TTAAGG CAAATTCCACTTT  CCTCTTGTACTTTGGCTC GT TCA TTTAT CCTTTTTATT TCGATTGCAT  ATTTGCC C TGTACTTGA AAATTGTCTCAAT TGG CCC  GTTGTTAGTTTT AGAC TTTGACT TA CAC GTTTGGT   AG TCTGAAAATTACAG AAT CCAC      CCC                                GTC          
 ||| |||||| |||||||||||||  |||||||||||||||||| || ||| ||||| |||||||||| ||||||||||  ||||||| | ||||||||| ||||||||||||| ||| |||  |||||||||||| |||| ||||||| || ||| |||||||   || |||||||||||||| ||| ||||      |||                                |||           
 ATT AATTCC GTTTAAGGTGAAA  GGGGAGCATGAAACCGAG TA AGT AAATG GGGAAGATGA AGCTAACGTA  TAAACGG G ACGTGAACT TTTAACAGAGTTA ACC GGG  CAGCAATCGAAA TCTG AAACTGG AT GTG TAAACTA   TC AGACTTTTAATGTT TTG GGTG      GGG                                CGG          
A   T      C             --                  C  C   T     T          G          AC       A A         G             A   A   -C            T    A       C  T   A       AAC  G              A   C    ------   AGGATCAAATTTTTTTTACAATTTTTTTTAAC   AAAACCACCG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End