SE3520292

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6510
  • Mimulus guttatus
  • SE3520292
  • Mutator
  • M9
  • scaffold_172:9431-9763
  • ATTATTTAT
  • TATTTATTGGGAAAAATATAGT

Secondary structure and sequence

TSD    TIR
5'



3'
AT  TT  T        A      TTTA        C   AA    A                         A               A  A         --CA    C   AC    A                --------------------------------  CGTAAAAACTTAC
  TA  TA TGGGAAAA TATAGT    GTCCCTCA ATT  CATC ATTTTACATTTGGTCCCTTATGTTT CAAAAAATACATTTG TC CTCATGTTT    AATT AAC  TTTT GTTATTTTCGTCAATT                                TC             
  ||  || |||||||| ||||||    |||||||| |||  |||| ||||||||||||||||||||||||| ||||||||||||||| || |||||||||    |||| |||  |||| ||||||||||||||||                                ||             G
  AT  AT ATCCTTTT ATATCA    TAGGGAGT TAA  GTGG TAAAGTGTAGACCAGGGAATACAAG GTTTTTTGTGTAAAT AG GAGTATAAA    TTAA TTG  AAAA CAGTAAAGGCAGTTAA                                CG             
TT  TT  T        A      CAAG        T   AC    C                         A               C  G         ATTA    A   CA    C                ATAGCAATCAGACAGTCAATTCAGTAACTACC  TATCCGAACTAAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End