SE3550293

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6511
  • Mimulus guttatus
  • SE3550293
  • PIF/harbinger
  • To19
  • scaffold_13:17216799-17217223
  • TAA
  • AGGGCATCTCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             ---TCA      ATTTCACCTGCTATCAGCTAAAAAAAGAAGGTTATAGCATTTTATAAGCAAAAAACTCACTCCAACGGGACATGTATAATTTAGCTAGCAAGCTAAATTCTGGTTTACAGCTGCTATGTATAGCTGGTGAGTATTCACAAATGCTAAACAAGATAATATTAAAATAATGGCCACTAAGTTTTACTGT
  AGGGCATCTCCAA      TTTACA                                                                                                                                                                                           
  |||||||||||||      ||||||                                                                                                                                                                                            
  TCTCGTAGAGGTT      ATCGAT                                                                                                                                                                                           
AA             TCCATT      TTTACACTCAACCATATACATAATATCGATCAGTTATCACAAATATGGTGCACACAAAATGTTAGAGTAAGGTTGGTATCGTACATATAAAATGTTAAAATATAATAATATAACAAAAAACTTAATAAAATAACAGTACACATACATGACAGTCATAAAATAGTATATTTTTTCCCTTTCTTAAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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