Plant MITE

SE3520296

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6514
Mimulus guttatus
SE3520296
Mutator
M5
scaffold_1:8609960-8610317
AAGATATTA
GATATTAGGGTAAATAATGAAAACCCCTGAATTTAGGCTAAATAACTAAACATACCCTATCCATAATAACTAAAATCCCCCTCTGA

Secondary structure and sequence

TSD TIR

5'

3'

AA      -A        A           -                  CT   C      -    ---- A    A       -     CTC   TTAGA    CA   A       A     AAATATGTACAATTTGTTATACCTTCTGTTAAATATGTGAGAATTAAAAAAAAAAAATCTGAA
  GATATT  GGGTAAAT ATGAAAACCCC TGAATTTAGGCTAAATAA  AAA ATACCC TATC    C TAAT ACTAAAA TCCCC   TGA     TGTT  TCG GTCTTTT ACATA                                                               
  ||||||  |||||||| ||||||||||| ||||||||||||||||||  ||| |||||| ||||    | |||| ||||||| |||||   |||     ||||  ||| ||||||| |||||                                                               A
  TTATAG  CCCATTTA TGCTTTTGGGG ATTTGAATCCGATTTATT  TTT TATGGG GTGG    G ATTA TGGTTTT AGGGG   ACT     ACAA  AGC CAGAAAG CGGTT                                                               
 A      AA        A           G                  AC   T      T    ATAA C    A       T     ---   -CGAA    --   -       -     GGAGGAATGTCACATAAAAAGCGCCTGAATCAAAAAACTAAGGTCCCTTATCTAAAATGTGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520296

AAGATATTAGGGTAAATAATGAAAACCCCTGAATTTAGGCTAAATAACTAAACATACCCTATCCATAATAACTAAAATCCCCCTCTGATTAGATGTTCATCGAGTCTTTTAACATAAAATATGTACAATTTGTTATACCTTCTGTTAAATATGTGAGAATTAAAAAAAAAAAATCTGAAATTGTGTAAAATCTATTCCCTGGAATCAAAAAACTAAGTCCGCGAAAAATACACTGTAAGGAGGTTGGCGAAAGACCGAAACAAAGCTCAGGGGATTTTTGGTAATTACGAATAGGTGTGGGTATTTTTCATTATTTAGCCTAAGTTTAGGGGGTTTTCGTAATTTACCCAAGATATTA

Copy Cancel