SE3520297

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6515
  • Mimulus guttatus
  • SE3520297
  • Mutator
  • M8
  • scaffold_12:7088901-7089372
  • TTTAATGAA
  • TTAATGAAGGGTAAATTACAATGGCCCCTGGGTTATTGCAAAATTACGAAAAAACCCTTCATGTTTGGATAATTACAACTACCCCTCAACTATGAATCTTCTTACATGTC

Secondary structure and sequence

TSD    TIR
5'



3'
T   A                  G         T   T CA              ---      ATG     A             -    -C          C       AT   ATTA T              CAACGT             TC             TAG             G    AAAAT   -  TTCT ---   CACCACAATCTGATATATACAAGCTAAAAAAC
 TTA TGAAGGGTAAATTACAAT GCCCCTGGG TAT G  AAATTACGAAAAAA   CCCTTC   TTTGG TAATTACAACTAC CCCT  AACTATGAAT TTCTTAC  GTC    C TGTGGTGTCAAATT      AATCTTCTAGATT  GTGGAATATTCTC   TTTGTACTTGTTT ATGC     ACA GT    G   ATG                                
 ||| |||||||||||||||||| ||||||||| ||| |  ||||||||||||||   ||||||   ||||| ||||||||||||| ||||  |||||||||| |||||||  |||    | ||||||||||||||      |||||||||||||  |||||||||||||   ||||||||||||| ||||     ||| ||    |   |||                                A
 AGT ATTTCCCATTTAATGTTG TGGGGACTC ATA C  TTTAATGCTTTTTT   GGGAAG   AAACC ATTAATGTTGGTG GGGA  TTGATATTTG AAGAATG  TAG    G ACGCCACAGTTTAG      TTAGAAGATCTAA  TACCTTATAAGAG   AAACATGGGTAAA TACG     GTA GA    A   CGA                                
A   A                  G         C   C AG              TGG      -AA     C             T    AA          A       GG   GTGG T              ATCACC             TA             TTA             A    -----   A  ---- GCT   GGTGTAAAAACTTCGTTCTACTGTCATTCTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End