SE3530298

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6516
  • Mimulus guttatus
  • SE3530298
  • hAT
  • Hat19
  • scaffold_8:11145243-11145983
  • CAAGACAA
  • CAGAGCCGGCCTTGGGGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAGACAA    G              --        - AAGCCTTGGCTTAGGGCCCCACCCCACAAGGGGGCCCCACAATTTTTTTCATAAATCACTATATGGCCCAAATAATTAGTTATATAGCACATTTTAGTCCTTAAATATTTTATTAGATGTTGTTTTAAGCTATATGTTAATGGAATATTTTATAATCTCAACTATTCAAAAAATATAAAGAAAGACCAATTTAAATATTGTGTTTTGTAGATAATATTGTTTATGAATTAATTATATAATTACTTATAGTATGTTATTAATATCCAAATGTATATGCCAATTTTTTTTAAGATTATAATTAAATCTTAAACTAAACATTCATATCACAAAAAG
        CAGA CCGGCCTTGGGGGT  AAGCCAGG G                                                                                                                                                                                                                                                                                                                                             
        |||| ||||||||||||||  |||||||| |                                                                                                                                                                                                                                                                                                                                              
        GTCT GGCCGGGACTCTTA  CCCCCGGG T                                                                                                                                                                                                                                                                                                                                             
AACAGAAC    G              AA        A TCGCCTCAAATTGTAATAATGAAACTAAAAAAATTTATCATAGAATATTTAATATAACAATAACCATGTGTAAAGATTGTTTACAGAATAAATTATTTGTTTGAAAAAAAGATAAAATAACTTTTCTTGTTACACTTAAACTTTATATAGTTTATGCTTGGAATTACAACAACCGAACATTTTTGTAAACTACTGTATTACTATATACGTAGATAAAGTACGTATTTGTTGTGTAATACACCTCCTTTTTTTTGTTAGCAACTAGTTTTAATAATTTTCATGTATATAACTAGTAATATAACAAGCAGAGTTGGCTGTTGTCAAGCAAAGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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