SE3520299

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6517
  • Mimulus guttatus
  • SE3520299
  • Mutator
  • M2
  • scaffold_3:5825593-5825951
  • TACTTTTTT
  • GGGCAAATTACGGCCACCCCCTGAGGTATGGTCAAATTACGAAAAAACCCCTCTTGTTTGGGTAATTACAGCCACCCCCTCG

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTTTTTT                 C       G                   AAC                               -   --------TTT     ATTTTTACGTAAAATTTATGTAATTCGTTTATTTACCGAACCAAATCGTATATTTAGTTCGGTAAACGGTATGAAA
         GGGCAAATTACGGCCAC CCCTGAG TATGGTCAAATTACGAAAA   CCCTCTTGTTTGGGTAATTACAGCCACCCCC TCG           TAAAT                                                                            
         ||||||||||||||||| ||||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||| |||           |||||                                                                             
         CCCGTTTAATGCCGGTG GGGACTC ATACCAGTTTAATGCTTTT   GGGAGGACAAACCCATTAATGTCGGTGGGGG AGT           TAGAA                                                                            
TTTTTTCAT                 A       G                   GGA                               T   TGATACATAAA     TGCTTTTCTGGGGAGTTCTCCATTTAAATCCCTACAATTAAGCCATTTTGGCTTGGTTTTAAAGCCATGCGGTTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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