Plant MITE

SE3520300

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6518
Mimulus guttatus
SE3520300
Mutator
M38
scaffold_2:4109170-4109409
CTATTGCGC
GCGCCGAGTTTAGTGCGTTTGGTATGCCTTTGTTATACTGAATTGCTAAGAAACTTCTCATGTTATACATATTAGCAAAAAAACCA

Secondary structure and sequence

TSD TIR

5'

3'

CTATT   ----CC A     G            G   T    A    -G     C   G         A       C            -AAA   CACAACC     AAATGATGCTTTTTAG
     GCG      G GTTTA TGCGTTTGGTAT CCT TGTT TACT  AATTG TAA AAACTTCTC TGTTATA ATATTAGCAAAA    CCA       CCCCT                
     |||      | ||||| |||||||||||| ||| |||| ||||  ||||| ||| ||||||||| ||||||| ||||||||||||    |||       |||||                G
     CGC      C CAAAT ACGTAAATCGTG GGA ACAA GTGA  TTAAC GTT TTTGAGGGG ATAATAT TATAATCGTTTT    GGT       GTCAA                
    C   CTTATC C     A            G   C    -    GA     A   A         A       T            AGAG   ATACCAA     TATAGTCGTTTGATGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520300

CTATTGCGCCGAGTTTAGTGCGTTTGGTATGCCTTTGTTATACTGAATTGCTAAGAAACTTCTCATGTTATACATATTAGCAAAAAAACCACACAACCCCCCTAAATGATGCTTTTTAGGGGTAGTTTGCTGATATAACTGAACCATATGGGAGATTTTGCTAATATTTATAATAAGGGGAGTTTATTGACAATTAGAGTGAACACAGGGGTGCTAAATGCAATAAACCCCTATTCCGCC

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